STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppAD-alanyl-aminopeptidase. (274 aa)    
Predicted Functional Partners:
dppB
Dipeptide ABC transporter (permease).
  
  
 0.946
dppC
Dipeptide ABC transporter (permease).
 
  
 0.906
dppE
Dipeptide ABC transporter (dipeptide-binding protein).
 
    0.865
dppD
Dipeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
  
  
 0.831
ykfA
Conserved hypothetical protein.
 
    0.824
ykfB
Putative muconate cycloisomerase.
 
    0.744
ykfC
Putative hydrolase.
 
    0.724
ykfD
Oligopeptide/dipeptide ABC transporter YkfD; Belongs to the ABC transporter superfamily.
  
    0.623
BL02131
Response regulator aspartate phosphatase.
  
     0.513
rapD
Response regulator aspartate phosphatase.
  
     0.497
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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