STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yesRConserved protein YesR. (344 aa)    
Predicted Functional Partners:
yesT
Putative carbohydrate esterase, Family 12, YesT.
 
  
 0.956
yesQ
Probable transporter permease protein YesQ.
  
  
 0.933
yesP
Putatice transporter permease protein YesP.
  
  
 0.920
yesO
Putative transport system substrate-binding protein YesO.
 
  
 0.907
yesW
Putative polysaccharide lyase family 11 protein.
 
  
 0.893
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.839
BL00713
Glycoside Hydrolase Family 28; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.836
yesY
Carbohydrate esterase, Family 12 YesY.
  
 0.790
BL03784
Putative carbohydrate esterase Family 12.
 
  
 0.790
yesU
YesU.
 
    0.782
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.