STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjmDZinc-containing alcohol dehydrogenase. (338 aa)    
Predicted Functional Partners:
uxuA
D-mannonate hydrolase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
  
  
 0.900
yjmF
Short-chain dehydrogenase/reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.710
BL03804
Hypothetical DNA-binding protein,putative transcriptional regulator.
       0.701
BL03800
Putative Zn binding dehydrogenase.
 
    
0.685
uxaB
Tagaturonate reductase (altronate oxidoreductase).
     
 0.625
uxaA
Altronate hydrolase.
     
 0.619
uxaC
Glucuronate isomerase.
      
 0.608
kdgA
2-keto-3-deoxygluconate-6-phosphate aldolase.
     
 0.539
exuT
Hexuronate transporter.
  
    0.534
BL03806
N-acetylmuramoyl-L-alanine amidase.
       0.479
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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