Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xkdDPhage related protein. (113 aa)    
Predicted Functional Partners:
xtrA
Phage related protein.
  
  
 0.984
xkdB
Phage related protein.
  
  
 0.949
xkdC
Phage related protein.
  
  
 0.870
xpf
Putative phage RNA polymerase sigma factor-like protein.
  
    0.824
xtmB
Putative phage terminase (large subunit).
  
    0.735
xtmA
Putative phage terminase (small subunit).
  
    0.727
xkdG
Phage related protein.
  
    0.566
BL03836
Hypothetical protein.
       0.537
xkdF
Phage related protein.
  
    0.532
BL05118
Hypothetical protein.
       0.524
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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