STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nfrA1FMN-containing NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family. (249 aa)    
Predicted Functional Partners:
nfrA2
NADPH-linked nitro/flavin reductase; Belongs to the flavin oxidoreductase frp family.
  
  
 
0.910
ribC
Riboflavin kinase and FAD synthase; Belongs to the ribF family.
    
 0.906
yclB
3-octaprenyl-4-hydroxybenzoate carboxy-lyase YclB; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.
     
  0.900
ywcH
Putative oxygenase.
  
  
 0.829
yfiN
ABC transporter, family 2,ABC transporter, family 2.
  
  
 0.632
birA
Transcriptional regulator and biotin acetyl-CoA-carboxylase synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.586
BL02838
Conserved hypothetical protein.
  
  
 0.572
BL03949
Peptidase M20D, amidohydrolase.
  
    0.531
ssuD
Aliphatic sulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
 
  0.524
yfiM
ABC transport system permease protein.
  
    0.475
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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