STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BL03907Putative 4-oxalocrotonate decarboxylase. (261 aa)    
Predicted Functional Partners:
BL03908
4-oxalocrotonate tautomerase.
 
  
 0.990
ywhB
Putative 4-oxalocrotonate tautomerase.
 
  
 0.935
BL03909
Putative oxidoreductase.
 
  
 0.907
BL03906
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.797
BL03957
Putative decarboxylase.
 
   
 0.745
BL03911
4-hydroxybenzoate 3-monooxygenase.
 
  
 0.737
BL03910
Putative transporter.
 
    0.675
BL03958
Transcriptional regulator (IclR family).
 
    0.666
BL02015
Hypothetical protein.
  
     0.460
yitJ
Homocysteine S-methyltransferase.
   
    0.450
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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