STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL039084-oxalocrotonate tautomerase. (63 aa)    
Predicted Functional Partners:
BL03907
Putative 4-oxalocrotonate decarboxylase.
 
  
 0.947
BL03906
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
  0.836
BL03909
Putative oxidoreductase.
 
   
 0.796
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
  
 
 0.789
BL03957
Putative decarboxylase.
 
     0.643
BL03910
Putative transporter.
 
     0.642
gntP
Gluconate permease.
   
  
 0.615
BL03911
4-hydroxybenzoate 3-monooxygenase.
       0.607
yfiE
Glyoxalase I YfiE.
    
 0.601
ywhB
Putative 4-oxalocrotonate tautomerase.
  
  
 
0.589
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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