Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ywaDAminopeptidase. (449 aa)    
Predicted Functional Partners:
ykvY
Peptidase M24,putative metallopetidase.
  
  
 0.558
pnbA
Para-nitrobenzyl esterase (intracellular esterase B); BL01300 similar to pnbA from Bacillus subtilis; Belongs to the type-B carboxylesterase/lipase family.
  
 0.522
ydiC
Peptidase M22, glycoprotease YdiC.
      
 0.519
ggt
Gamma-glutamyltranspeptidase.
  
   0.517
dacC
Penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase).
  
     0.508
pepT
Peptidase T (tripeptidase); Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
      
 0.478
BL03848
Transcriptional regulator (IclR family).
       0.471
yusX
Peptidase M, neutral zinc metallopeptidases.
     
 0.467
ampS
Aminopeptidase.
      
 0.464
BL03063
Putative carboxypeptidase.
 
     0.457
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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