STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL03957Putative decarboxylase. (316 aa)    
Predicted Functional Partners:
ykcA
Glyoxalase/Bleomycin resistance protein/dioxygenase domain superfamily protein.
    
 0.851
BL03909
Putative oxidoreductase.
 
  
 0.784
BL03907
Putative 4-oxalocrotonate decarboxylase.
 
   
 0.755
BL03958
Transcriptional regulator (IclR family).
       0.755
BL03906
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.731
BL03908
4-oxalocrotonate tautomerase.
 
     0.643
BL03053
Probable transcriptional regulator (AraC/XylS family).
    
  0.622
nasE
Assimilatory nitrite reductase (subunit).
    
  0.605
BL03911
4-hydroxybenzoate 3-monooxygenase.
 
 
 0.595
pyrK
Dihydroorotate dehydrogenase (electron transfer subunit); Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
 
  0.590
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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