STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ywlDYwlD; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family. (186 aa)    
Predicted Functional Partners:
mntR
Transcriptional regulator; Central regulator of manganese homeostasis. Belongs to the DtxR/MntR family.
 
   
 0.769
yybP
YybP.
      
 0.724
ykoY
Integral membrane protein.
      
 0.724
mntH
Manganese transporter; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
      
 0.702
ywlC
Conserved protein YwlC; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
  
    0.694
spoVFA
Dipicolinate synthase subunit A.
  
     0.640
ywlE
Low molecular weight phosphotyrosine protein phosphatase.
       0.621
BL02035
Hypothetical protein.
  
     0.602
ytaF
Conserved membrane protein YtaF; Probably functions as a manganese efflux pump.
  
     0.577
yabQ
Essential protein for formation of the spore cortex YabQ.
  
     0.576
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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