STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywmCYwmC. (228 aa)    
Predicted Functional Partners:
ypjP
Conserved hypothetical protein YpjP.
      
 0.679
BL03050
Putative SAM methyltransferase.
  
 
 0.534
yckK
Putative extracellular solute-binding protein, family 3 YckK; Belongs to the bacterial solute-binding protein 3 family.
  
  
  0.466
BL03224
Hypothetical protein.
  
 
 0.460
yczC
Conserved membrane protein YczC.
 
     0.446
spoIID
SpoIID.
       0.440
ywmD
YwmD.
 
    
0.435
bprB
Bacillopeptidase F.
  
   
 0.430
nucA
Nuclease NucA.
  
   
 0.417
hemY
Protoporphyrinogen IX and coproporphyrinogen III oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
 
 0.414
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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