STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbBProbable transcriptional regulator (AraC/XylS family). (531 aa)    
Predicted Functional Partners:
feuB
Integral membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.867
feuC
Integral membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.864
yuiI
Triacetone hydrolase.
 
  
 0.845
fhuC
Ferrichrome ABC transporter (ATP-binding protein).
  
 0.819
yvrA
Putative iron transport system ATP-binding protein YvrA.
  
 0.819
yusV
ABC transporter.
  
 0.819
dhbF
DhbF.
 
  
 0.812
gltA
Glutamate synthase (large subunit).
  
 
  0.784
ribA
GTP cyclohydrolase II and 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.777
feuA
Iron-binding protein.
 
  
0.776
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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