STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ntdRTranscriptional activator of ntdABC operon (LacI family). (329 aa)    
Predicted Functional Partners:
gltA
Glutamate synthase (large subunit).
    
 
 0.782
dhbF
DhbF.
    
 
 0.745
ptsH
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein).
    
 
 0.697
lchAC
Lichenysin synthetase C.
    
   0.633
ntdC
Putative oxidoreductase.
 
     0.583
ntdB
HAD-superfamily hydrolase, subfamily IIB.
  
    0.544
ntdA
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
       0.542
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.485
lchAB
Lichenysin synthetase B.
    
   0.434
lchAA
Lichenysin synthetase A.
    
 
 0.424
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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