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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csfBCsfB; sigma-F-transcribed gene. (63 aa)    
Predicted Functional Partners:
sspE
Small acid-soluble spore protein (gamma-type SASP).
  
   
 0.831
yutH
Conserved protein YutH.
  
     0.764
yqfZ
Conserved protein YqfZ.
  
     0.754
yabQ
Essential protein for formation of the spore cortex YabQ.
  
     0.744
yqfQ
Tubulin YqfQ.
  
     0.742
yqgE
Sugar transporter superfamily.
  
     0.735
ylbD
Hypothetical protein.
  
     0.733
ysxE
Conserved protein YsxE.
  
     0.731
ytrI
Conserved protein YtrI.
  
     0.728
yfkD
Conserved protein YfkD.
  
     0.723
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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