STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcKConserved protein YdcK; Belongs to the SprT family. (153 aa)    
Predicted Functional Partners:
ecsB
ABC transporter (membrane protein).
  
     0.672
yabA
DnaA and DnaN interacting protein containing domain DUF972- YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.650
BL05042
Hypothetical protein.
       0.601
ypsA
Conserved hypothetical protein YpsA; Belongs to the UPF0398 family.
  
     0.586
yflE
Sulfatase YflE; Belongs to the LTA synthase family.
  
     0.544
ywzB
Conserved protein YwzB.
  
     0.535
yfnI
Putative sulfatase; Belongs to the LTA synthase family.
  
     0.510
yozE
Hypothetical protein; Belongs to the UPF0346 family.
  
     0.493
dnaI
Helicase loader.
  
     0.474
ykuL
CBS domain protein YkuL.
  
     0.467
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.