STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sigVRNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V); Belongs to the sigma-70 factor family. ECF subfamily. (165 aa)    
Predicted Functional Partners:
yrhM
YrhM; Similar to anti-sigma factor.
 
 
 0.985
sigM
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-M); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.926
sigY
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-Y); Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.872
yrhL
ABC transporter; Putative acyltransferase.
  
  
 0.842
rsiW
Antisigma factor RsiW; Is the anti-sigma factor for SigW. The presence of RsiW leads to the inactivation of SigW, and its proteolytic destruction to sigma-W activation (By similarity); Belongs to the zinc-associated anti-sigma factor (ZAS) superfamily. Anti-sigma-W factor family.
  
 
 0.670
rpoB
RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.571
rpoC
RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.533
BL03093
Hypothetical protein.
  
   0.486
rpoA
RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.475
cheR
Methyl-accepting chemotaxis proteins (MCPs) methyltransferase.
    
   0.447
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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