STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrhMYrhM; Similar to anti-sigma factor. (286 aa)    
Predicted Functional Partners:
sigV
RNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V); Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.975
yrhL
ABC transporter; Putative acyltransferase.
 
  
 0.614
yceG
Conserved hypothetical protein YceG.
  
     0.568
ydaN
Putative cellulose synthase.
  
     0.545
xkdU
Hypothetical phage related protein.
  
     0.506
ydaL
YdaL.
  
     0.456
ypkP
Conserved hypothetical protein.
  
     0.403
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.