STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhaXHAD-superfamily hydrolase protein YhaX. (287 aa)    
Predicted Functional Partners:
hemZ
Coproporphyrinogen III oxidase.
       0.648
yutH
Conserved protein YutH.
  
   
 0.645
yheD
Conserved hypothetical protein YheD.
  
  
 0.598
ysxE
Conserved protein YsxE.
  
  
 0.553
yheA
Conserved hypothetical protein YheA; Belongs to the UPF0342 family.
       0.545
BL07010
Hypothetical protein; BLi01059.
       0.541
yheB
Conserved hypothetical protein YheB.
       0.488
gerQ
GerQ; Essential for the localization of CwlJ in the spore coat and for spore germination triggered by calcium and dipicolinic acid (DPA). Its assembly into the spore coat is dependent on the coat morphogenetic proteins CotE and SpoIVA.
   
  
 0.467
yhaR
Enoyl-CoA hydratase/isomerase YhaR.
       0.466
ybaK
Conserved hypothetical protein YbaK.
  
     0.465
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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