STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerPFSpore germination protein. (72 aa)    
Predicted Functional Partners:
gerPB
Spore germination protein.
 
  
 0.973
gerPE
Spore germination protein.
 
  
 0.972
gerPD
Spore germination protein.
 
  
 0.967
gerPC
Spore germination protein.
 
  
 0.962
gerPA
Spore germination protein.
 
  
0.791
ylaJ
Hypothetical protein.
  
     0.742
tasA
Translocation-dependent antimicrobial spore component.
  
     0.695
yhdB
Conserved hypothetical protein YhdB.
  
     0.678
BL03723
Hypothetical protein.
  
    0.667
cotY
Spore coat protein (insoluble fraction).
  
  
 0.657
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.