STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yjcHConserved protein,putative carbohydrate esterase family 1, YjcH. (240 aa)    
Predicted Functional Partners:
yjcG
Conserved protein YjcG; Belongs to the 2H phosphoesterase superfamily. YjcG family.
 
  
 0.972
dhbF
DhbF.
  
  
 0.928
lchAA
Lichenysin synthetase A.
  
  
 0.910
dhbB
Isochorismatase.
  
  
 0.898
lchAB
Lichenysin synthetase B.
  
  
 0.851
yjcF
Probable acetyltransferase YjcF.
  
    0.817
lchAC
Lichenysin synthetase C.
  
  
 0.808
BL07017
Hypothetical protein; BLi01286.
       0.773
ytaP
Putative endopeptidase YtaP.
      
 0.723
ywcB
Conserved protein YwcB.
      
 0.704
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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