Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xhlAXhlA. (89 aa)    
Predicted Functional Partners:
xhlB
Holin.
  
  
 0.922
xkdQ
Hypothetical phage related protein.
   
  
 0.674
xkdO
Hypothetical phage related protein.
   
  
 0.625
xtmA
Putative phage terminase (small subunit).
   
  
 0.624
BL00967
Phage related protein.
  
    0.620
BL03524
Glycoside Hydrolase Family 25.
       0.589
BL07026
Hypothetical protein; BLi01483.
       0.586
xkdM
Hypothetical phage related protein.
   
  
 0.569
xkdT
Hypothetical phage related protein.
   
  
 0.566
xkdG
Phage related protein.
   
  
 0.560
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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