STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykuSYkuS; Belongs to the UPF0180 family. (81 aa)    
Predicted Functional Partners:
ykuR
Peptidase M20D, amidohydrolase YkuR; Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate.
       0.719
ykuQ
Tetrahydrodipicolinate succinylase; Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.
       0.585
yqgE
Sugar transporter superfamily.
  
     0.522
ytfI
Conserved protein YtfI.
  
     0.514
sspH
Small acid-soluble spore protein; Belongs to the SspH family.
  
     0.454
ccpC
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.422
BL00900
Spore germination protein.
  
     0.421
yjcA
YjcA.
  
     0.411
ykuU
Alkyl hydroperoxide reductase.
       0.411
ykuV
Thioredoxin domain protein YkuV.
       0.408
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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