STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ykuUAlkyl hydroperoxide reductase. (180 aa)    
Predicted Functional Partners:
ykuV
Thioredoxin domain protein YkuV.
 
 0.981
ahpF
Alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase.
 
  
 0.919
dnaK
Class I heat-shock protein (molecular chaperone); Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.795
yojM
Copper/Zinc superoxide dismutase.
   
 
 0.710
trxB
Thioredoxin reductase.
  
 
 0.675
ytpP
Putative thioredoxin YtpP.
  
 0.639
yusE
YusE.
  
 0.639
slp
Small peptidoglycan-associated lipoprotein.
  
 0.614
ahpCA
Alkyl hydroperoxide reductase large subunit.
  
 
 0.571
katX
Major catalase in spores; Belongs to the catalase family.
   
 
 0.558
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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