Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ylaIYlaI. (68 aa)    
Predicted Functional Partners:
ytlQ
Conserved protein YtlQ.
  
     0.746
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
     0.741
yrrS
Conserved protein YrrS.
  
     0.726
atpI
ATP synthase (subunit i).
  
     0.725
ytzE
Probable transcriptional regulator YtzE.
  
     0.697
fliJ
Flagellar protein.
  
     0.688
ylxL
Conserved hypothetical protein.
  
     0.670
ysoA
Conserved protein YsoA.
  
     0.665
ylaJ
Hypothetical protein.
       0.664
yjbH
Conserved protein YjbH; Belongs to the UPF0413 family.
  
     0.651
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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