Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ylbFYlbF; Belongs to the UPF0342 family. (149 aa)    
Predicted Functional Partners:
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
 
 
 0.997
yaaT
Putative signal peptidase II YaaT; Involved in the transduction of signals to the phosphorelay for initiation of sporulation, similar to signal peptidase II, contains PSP1_C terminal domain.
 
   
 0.944
ylbG
Conserved hypothetical protein.
 
    0.875
ylaN
YlaN; Belongs to the UPF0358 family.
 
     0.803
ytpQ
Conserved protein YtpQ; Belongs to the UPF0354 family.
  
     0.659
fer
Ferredoxin.
  
     0.654
yutD
Conserved protein YutD.
  
     0.615
yuzB
Conserved protein YuzB; Belongs to the UPF0349 family.
  
     0.604
ylbE
Hypothetical protein.
       0.601
ylbD
Hypothetical protein.
       0.590
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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