STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL05203Amino acid/polyamine transporter I. (445 aa)    
Predicted Functional Partners:
ybgF
Amino acid permease YbgF.
  
  
  0.617
BL00697
Putative Glycoside Hydrolase Family 23.
       0.561
malL
Glycoside Hydrolase Family 13, MalL; Similar to oligo-1,4-1,6-alpha-glucosidase (sucrase-maltase-isomaltase).
   
  0.546
yvdF
Glycoside Hydrolase Family 13 YvdF; Putative neopullulanase.
   
  0.546
amyL
Alpha amylase, Glycoside Hydrolase Family 13; BL00499 similar to treA from Bacillus subtilis.
   
  0.546
yugT
Glycoside Hydrolase Family 13, YugT.
   
  0.546
treA
Glycoside Hydrolase Family 13.
   
  0.546
ybxG
Amino acid permease YbxG.
  
     0.529
yvbW
Putative Amino acid permease YvbW.
  
     0.528
BL05202
Hypothetical protein.
       0.526
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.