STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yodIHypothetical protein. (84 aa)    
Predicted Functional Partners:
yodH
SAM dependent methyltransferase.
 
    0.834
yjaZ
Conserved hypothetical protein YjaZ.
 
     0.727
ylxL
Conserved hypothetical protein.
  
     0.672
spoVIF
SpoVIF.
  
    0.649
ysxD
YsxD.
  
     0.616
lytD
N-acetylglucosaminidase (major autolysin), Glycoside Hydrolase Family 73.
  
     0.611
yxlE
YxlE.
  
     0.599
cotX
Spore coat protein (insoluble fraction).
  
    0.573
fenH
FenH.
  
     0.559
ylyA
Hypothetical protein.
  
     0.547
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.