STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ferFerredoxin. (82 aa)    
Predicted Functional Partners:
yumC
FAD-dependent pyridine nucleotide-disulphide oxidoreductase YumC.
     
 0.759
BL02233
Bipartite response regulator, C-terminal effector.
 
     0.687
ymcA
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.667
ylbF
YlbF; Belongs to the UPF0342 family.
  
     0.654
yhbA
4Fe-4S cluster binding putative ferredoxin; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
 
   
 0.600
BL02230
Peptidoglycan-binding protein.
       0.590
BL02929
Hypothetical protein.
  
     0.569
BL02229
Hypothetical protein.
       0.558
yfkF
Putative transcriptional regulator YfkF; Similar to multidrug-efflux transporter.
  
     0.554
BL02231
Hypothetical protein.
       0.539
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.