STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdHPeriplasmic solute binding protein. (343 aa)    
Predicted Functional Partners:
BL03701
ABC transporter.
 
 
 0.981
BL03702
Transcriptional regulator.
 
 
 0.976
mntB
Manganese ABC transporter (ATP-binding protein).
 
 
 0.968
mntD
Manganese ABC transporter.
 
 
 0.967
yciC-2
ABC transporter.
  
  
 0.783
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
  
 0.660
yciC
Cobalamin synthesis protein/P47K; Zinc transport protein.
  
  
 0.584
xylR
Transcriptional regulator.
  
 
 0.555
BL03668
Cobalamin synthesis protein/P47K family protein.
  
  
 0.549
yusV
ABC transporter.
 
 
 0.496
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.