STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjOYdjO. (74 aa)    
Predicted Functional Partners:
ysxD
YsxD.
  
     0.541
BL03147
Hypothetical protein.
       0.531
BL01994
DNA binding domain, excisionase family protein.
  
     0.506
cotJA
CotJA.
  
     0.466
ybcF
Carbonic anhydrase YbcF.
  
     0.462
yqaB
Phage related protein.
  
     0.446
yaaL
Conserved hypothetical protein YaaL.
  
     0.445
yvgS
Putative DNA helicase.
  
     0.442
yhaH
Conserved hypothetical protein YhaH.
  
     0.437
xpf
Putative phage RNA polymerase sigma factor-like protein.
  
     0.429
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.