STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BL05330Putative carboxypeptidase; Belongs to the peptidase S11 family. (384 aa)    
Predicted Functional Partners:
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
 
  
 
0.677
dacF
Penicilin binding protein (putative D-alanyl-D-alanine carboxypeptidase); Belongs to the peptidase S11 family.
 
  
 
0.653
dacB
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*); Belongs to the peptidase S11 family.
  
  
 
0.637
dacC
Penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase).
     
 0.591
yodJ
Putative carboxypeptidase.
     
 0.573
pbpD
Penicillin-binding protein/Glycosyl Transferase Family 51.
   
 
 0.556
yusX
Peptidase M, neutral zinc metallopeptidases.
       0.550
ctpB
Peptidase S41A, C-terminal protease; Belongs to the peptidase S41A family.
  
 0.546
yusZ
Short-chain dehydrogenase/reductase YusZ; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.536
yrvJ
N-acetylmuramoyl-L-alanine amidase YrvJ.
   
 
 0.513
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.