STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yusZShort-chain dehydrogenase/reductase YusZ; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (280 aa)    
Predicted Functional Partners:
ykvY
Peptidase M24,putative metallopetidase.
     
 0.712
ytkK
Short-chain dehydrogenase/reductase YtkK.
  
    0.695
dhbF
DhbF.
  
  
 0.601
gspA
Glycosyl Transferase Family 8.
  
    0.592
mrgA
Metalloregulation DNA-binding stress protein; Belongs to the Dps family.
       0.564
tpx
Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily.
   
    0.555
BL05330
Putative carboxypeptidase; Belongs to the peptidase S11 family.
       0.541
BL01309
Short-chain dehydrogenase/reductase SDR.
  
    0.510
yvaG
Putative 3-oxoacyl- acyl-carrier protein reductase YvaG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.484
yvyC
Flagellar protein YvyC.
    
   0.455
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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