Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BL01445 | yojE | BL01445 | BL01444 | Conserved hypothetical protein. | Putative chloramphenicol sensitive protein. | 0.624 |
BL01445 | yojF | BL01445 | BL01446 | Conserved hypothetical protein. | Hypothetical protein. | 0.815 |
BL01445 | yojG | BL01445 | BL01447 | Conserved hypothetical protein. | Conserved protein, Carbohydrate Esterase Family 14. | 0.775 |
BL01445 | yozR | BL01445 | BL01464 | Conserved hypothetical protein. | Hypothetical protein; Involved in spore germination. | 0.478 |
cotF | cotM | BL00089 | BL02950 | Spore coat protein F. | Spore coat protein (outer). | 0.467 |
cotF | cotY | BL00089 | BL02672 | Spore coat protein F. | Spore coat protein (insoluble fraction). | 0.627 |
cotF | gerPB | BL00089 | BL01318 | Spore coat protein F. | Spore germination protein. | 0.529 |
cotF | gerPF | BL00089 | BL05099 | Spore coat protein F. | Spore germination protein. | 0.493 |
cotF | yozR | BL00089 | BL01464 | Spore coat protein F. | Hypothetical protein; Involved in spore germination. | 0.482 |
cotM | cotF | BL02950 | BL00089 | Spore coat protein (outer). | Spore coat protein F. | 0.467 |
cotM | gerPB | BL02950 | BL01318 | Spore coat protein (outer). | Spore germination protein. | 0.460 |
cotM | gerPF | BL02950 | BL05099 | Spore coat protein (outer). | Spore germination protein. | 0.430 |
cotM | yozR | BL02950 | BL01464 | Spore coat protein (outer). | Hypothetical protein; Involved in spore germination. | 0.501 |
cotY | cotF | BL02672 | BL00089 | Spore coat protein (insoluble fraction). | Spore coat protein F. | 0.627 |
cotY | gerPB | BL02672 | BL01318 | Spore coat protein (insoluble fraction). | Spore germination protein. | 0.423 |
cotY | gerPF | BL02672 | BL05099 | Spore coat protein (insoluble fraction). | Spore germination protein. | 0.657 |
cotY | yozR | BL02672 | BL01464 | Spore coat protein (insoluble fraction). | Hypothetical protein; Involved in spore germination. | 0.429 |
gerPB | cotF | BL01318 | BL00089 | Spore germination protein. | Spore coat protein F. | 0.529 |
gerPB | cotM | BL01318 | BL02950 | Spore germination protein. | Spore coat protein (outer). | 0.460 |
gerPB | cotY | BL01318 | BL02672 | Spore germination protein. | Spore coat protein (insoluble fraction). | 0.423 |
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