Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cydD | menA | BL00926 | BL01413 | ABC membrane transporter (ATP-binding protein). | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.448 |
cydD | menH | BL00926 | BL02783 | ABC membrane transporter (ATP-binding protein). | Methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.582 |
dhbF | hepS | BL04024 | BL02784 | DhbF. | Heptaprenyl diphosphate synthase component I. | 0.855 |
dhbF | lchAA | BL04024 | BL01726 | DhbF. | Lichenysin synthetase A. | 0.999 |
dhbF | lchAC | BL04024 | BL01728 | DhbF. | Lichenysin synthetase C. | 0.999 |
dhbF | menH | BL04024 | BL02783 | DhbF. | Methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.855 |
dhbF | metH | BL04024 | BL01308 | DhbF. | Putative 5-methyltetrahydrofolate--homocysteine methyltransferase MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.758 |
hepS | dhbF | BL02784 | BL04024 | Heptaprenyl diphosphate synthase component I. | DhbF. | 0.855 |
hepS | hepT | BL02784 | BL02782 | Heptaprenyl diphosphate synthase component I. | Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family. | 0.992 |
hepS | lchAA | BL02784 | BL01726 | Heptaprenyl diphosphate synthase component I. | Lichenysin synthetase A. | 0.785 |
hepS | lchAC | BL02784 | BL01728 | Heptaprenyl diphosphate synthase component I. | Lichenysin synthetase C. | 0.743 |
hepS | menA | BL02784 | BL01413 | Heptaprenyl diphosphate synthase component I. | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.651 |
hepS | menH | BL02784 | BL02783 | Heptaprenyl diphosphate synthase component I. | Methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.948 |
hepS | metH | BL02784 | BL01308 | Heptaprenyl diphosphate synthase component I. | Putative 5-methyltetrahydrofolate--homocysteine methyltransferase MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.550 |
hepS | mtrB | BL02784 | BL02785 | Heptaprenyl diphosphate synthase component I. | Tryptophan operon RNA-binding attenuation protein (TRAP); Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan. Belongs to the MtrB family. | 0.677 |
hepS | ndk | BL02784 | BL02781 | Heptaprenyl diphosphate synthase component I. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.583 |
hepT | hepS | BL02782 | BL02784 | Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family. | Heptaprenyl diphosphate synthase component I. | 0.992 |
hepT | menA | BL02782 | BL01413 | Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family. | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.901 |
hepT | menH | BL02782 | BL02783 | Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family. | Methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.961 |
hepT | mtrB | BL02782 | BL02785 | Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family. | Tryptophan operon RNA-binding attenuation protein (TRAP); Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan. Belongs to the MtrB family. | 0.596 |
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