Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dhbF | lchAA | BL04024 | BL01726 | DhbF. | Lichenysin synthetase A. | 0.999 |
dhbF | lchAB | BL04024 | BL01727 | DhbF. | Lichenysin synthetase B. | 0.999 |
dhbF | lchAC | BL04024 | BL01728 | DhbF. | Lichenysin synthetase C. | 0.999 |
dhbF | menE | BL04024 | BL02405 | DhbF. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.989 |
dhbF | ytxM | BL04024 | BL02407 | DhbF. | O-succinylbenzoate synthase; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). | 0.928 |
dhbF | yusL | BL04024 | BL02180 | DhbF. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL. | 0.895 |
lchAA | dhbF | BL01726 | BL04024 | Lichenysin synthetase A. | DhbF. | 0.999 |
lchAA | lchAB | BL01726 | BL01727 | Lichenysin synthetase A. | Lichenysin synthetase B. | 0.999 |
lchAA | lchAC | BL01726 | BL01728 | Lichenysin synthetase A. | Lichenysin synthetase C. | 0.999 |
lchAA | menE | BL01726 | BL02405 | Lichenysin synthetase A. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.987 |
lchAA | ytxM | BL01726 | BL02407 | Lichenysin synthetase A. | O-succinylbenzoate synthase; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). | 0.898 |
lchAA | yusL | BL01726 | BL02180 | Lichenysin synthetase A. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL. | 0.607 |
lchAB | dhbF | BL01727 | BL04024 | Lichenysin synthetase B. | DhbF. | 0.999 |
lchAB | lchAA | BL01727 | BL01726 | Lichenysin synthetase B. | Lichenysin synthetase A. | 0.999 |
lchAB | lchAC | BL01727 | BL01728 | Lichenysin synthetase B. | Lichenysin synthetase C. | 0.999 |
lchAB | menE | BL01727 | BL02405 | Lichenysin synthetase B. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.926 |
lchAB | ytxM | BL01727 | BL02407 | Lichenysin synthetase B. | O-succinylbenzoate synthase; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). | 0.777 |
lchAB | yusL | BL01727 | BL02180 | Lichenysin synthetase B. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase YusL. | 0.498 |
lchAC | dhbF | BL01728 | BL04024 | Lichenysin synthetase C. | DhbF. | 0.999 |
lchAC | lchAA | BL01728 | BL01726 | Lichenysin synthetase C. | Lichenysin synthetase A. | 0.999 |
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