STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvcKConserved hypothetical protein YvcK; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (317 aa)    
Predicted Functional Partners:
yvcJ
Uncharacterised P-loop ATPase protein family UPF0042; Displays ATPase and GTPase activities.
  
  
 0.982
yvcL
Conserved protein YvcL; Involved in cell division and chromosome segregation.
 
  
 0.970
crh
Catabolite repression protein.
  
  
 0.859
yvcI
NUDIX hydrolase.
  
    0.803
prpC
Protein phosphatase.
  
  
 0.725
nat
Arylamine N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
  
  
 0.655
yvcT
Probable 2-ketogluconate reductase YvcT; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.567
yvdA
Carbonic anhydrase, prokaryotic YvdA.
      
 0.566
yvdB
Sulfate transporter/antisigma-factor antagonist.
      
 0.554
ydfE
Hypothetical protein.
   
  
 0.549
Your Current Organism:
Bacillus licheniformis
NCBI taxonomy Id: 279010
Other names: B. licheniformis DSM 13 = ATCC 14580, Bacillus licheniformis ATCC 14580, Bacillus licheniformis ATCC 14580 = DSM 13, Bacillus licheniformis DSM 13, Bacillus licheniformis DSM 13 = ATCC 14580
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