STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_0229Putative D-glucarate or D-galactorate regulator; GntR family. (252 aa)    
Predicted Functional Partners:
LT85_0231
D-galactarate dehydratase.
 
   
 0.757
LT85_3361
Transcriptional regulator; GntR family.
  
  
 0.743
LT85_0693
Transcriptional regulator; GntR family.
  
  
 0.737
LT85_2552
Transcriptional regulator; GntR family.
  
  
 0.716
LT85_0228
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
   
 0.647
LT85_0230
D-glucarate permease.
 
     0.646
LT85_1548
Transcriptional regulator; GntR family.
  
  
 0.628
LT85_2288
Transcriptional regulator; GntR family.
 
  
 0.515
LT85_0646
Transcriptional regulator; GntR family.
  
  
 0.509
LT85_1912
Transcriptional regulator; IclR family.
 
  
 0.458
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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