STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_0508Hypothetical protein. (339 aa)    
Predicted Functional Partners:
flhA
Flagellar biosynthesis protein FlhA.
  
  
 0.862
fliI
Flagellum-specific ATP synthase FliI.
  
 
 0.850
LT85_0512
Type III secretion inner membrane protein (YscQ,homologous to flagellar export components).
  
 
 0.727
LT85_3815
Hypothetical protein.
   
 
 0.725
flhB
Flagellar biosynthesis protein FlhB.
  
  
 0.722
LT85_2895
2-oxoglutarate dehydrogenase E1 component.
    
 
 0.718
LT85_0513
Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components).
  
  
 0.702
LT85_0510
Hypothetical protein.
       0.695
LT85_0492
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
  
  
 0.693
LT85_2894
Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
    
 
 0.687
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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