Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LT85_0619 | LT85_0620 | LT85_0619 | LT85_0620 | Hypothetical protein. | Putative nitrogen assimilation regulatory protein NtrX. | 0.497 |
LT85_0619 | LT85_3535 | LT85_0619 | LT85_3535 | Hypothetical protein. | LSU ribosomal protein L28p. | 0.518 |
LT85_0619 | LT85_4886 | LT85_0619 | LT85_4886 | Hypothetical protein. | Hypothetical small protein yjiX. | 0.411 |
LT85_0619 | dksA | LT85_0619 | LT85_4595 | Hypothetical protein. | C4-type zinc finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | 0.510 |
LT85_0619 | folE2 | LT85_0619 | LT85_0812 | Hypothetical protein. | GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate. | 0.524 |
LT85_0619 | rpmG | LT85_0619 | LT85_3536 | Hypothetical protein. | LSU ribosomal protein L33p; Zinc-independent; Belongs to the bacterial ribosomal protein bL33 family. | 0.433 |
LT85_0619 | rpoH | LT85_0619 | LT85_0618 | Hypothetical protein. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.419 |
LT85_0619 | rpsN | LT85_0619 | LT85_0409 | Hypothetical protein. | SSU ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.615 |
LT85_0619 | znuA | LT85_0619 | LT85_3701 | Hypothetical protein. | Zinc ABC transporter; Periplasmic-binding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family. | 0.528 |
LT85_0620 | LT85_0619 | LT85_0620 | LT85_0619 | Putative nitrogen assimilation regulatory protein NtrX. | Hypothetical protein. | 0.497 |
LT85_0620 | dksA | LT85_0620 | LT85_4595 | Putative nitrogen assimilation regulatory protein NtrX. | C4-type zinc finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | 0.451 |
LT85_3535 | LT85_0619 | LT85_3535 | LT85_0619 | LSU ribosomal protein L28p. | Hypothetical protein. | 0.518 |
LT85_3535 | rpmG | LT85_3535 | LT85_3536 | LSU ribosomal protein L28p. | LSU ribosomal protein L33p; Zinc-independent; Belongs to the bacterial ribosomal protein bL33 family. | 0.999 |
LT85_3535 | rpsN | LT85_3535 | LT85_0409 | LSU ribosomal protein L28p. | SSU ribosomal protein S14p; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
LT85_3535 | znuA | LT85_3535 | LT85_3701 | LSU ribosomal protein L28p. | Zinc ABC transporter; Periplasmic-binding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family. | 0.612 |
LT85_4886 | LT85_0619 | LT85_4886 | LT85_0619 | Hypothetical small protein yjiX. | Hypothetical protein. | 0.411 |
dksA | LT85_0619 | LT85_4595 | LT85_0619 | C4-type zinc finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | Hypothetical protein. | 0.510 |
dksA | LT85_0620 | LT85_4595 | LT85_0620 | C4-type zinc finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | Putative nitrogen assimilation regulatory protein NtrX. | 0.451 |
dksA | rpoH | LT85_4595 | LT85_0618 | C4-type zinc finger protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.641 |
folE2 | LT85_0619 | LT85_0812 | LT85_0619 | GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate. | Hypothetical protein. | 0.524 |
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