STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_0627Hypothetical protein. (181 aa)    
Predicted Functional Partners:
LT85_3639
Putative transmembrane protein.
  
     0.767
LT85_0608
Putative transmembrane protein.
  
     0.762
LT85_0933
Putative transmembrane protein.
  
     0.738
LT85_4569
Putative PROLIN-rich signal peptide protein.
  
     0.735
rseA
Sigma factor RpoE negative regulatory protein RseA.
  
     0.726
LT85_4568
Putative PROLIN-rich signal peptide protein.
  
     0.725
LT85_4996
Porin; Gram-negative type.
  
     0.707
LT85_4575
Histone acetyltransferase HPA2 -related acetyltransferase.
  
     0.702
LT85_4607
General secretion pathway protein L.
  
     0.696
LT85_4425
Histone protein.
  
     0.676
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.