STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_0943PE_PGRS family protein. (491 aa)    
Predicted Functional Partners:
LT85_0944
Putative activation/secretion signal peptide protein.
 
 
 0.891
LT85_4996
Porin; Gram-negative type.
  
    0.733
tadD
Flp pilus assembly protein TadD; Contains TPR repeats.
  
     0.717
LT85_1835
Putative transmembrane protein.
  
     0.709
LT85_0956
Putative transmembrane protein.
  
     0.691
LT85_1603
Outer membrane protein.
  
    0.690
tadG
Flp pilus assembly protein TadG.
 
     0.672
LT85_0933
Putative transmembrane protein.
  
     0.667
LT85_3452
Outer membrane protein.
  
    0.663
LT85_3628
tRNA(Ile)-lysidine synthetase.
  
   
 0.657
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.