STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_1152Sensory box histidine kinase/response regulator. (245 aa)    
Predicted Functional Partners:
LT85_2680
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
 0.999
LT85_3102
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
 0.999
cheA
Signal transduction histidine kinase CheA.
 
 
 0.994
LT85_2274
Single-stranded DNA-binding protein.
 
 
 0.994
LT85_3100
Sensory box histidine kinase/response regulator.
 
 
 0.993
LT85_3101
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
 0.991
LT85_2075
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein).
 
 
 0.989
LT85_3917
Putative two-component sensor; Near polyamine transporter.
 
 
 0.988
LT85_1157
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY.
  
 
 0.987
LT85_2647
Hypothetical protein.
 
 
 0.987
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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