STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_1206GGDEF domain. (467 aa)    
Predicted Functional Partners:
LT85_3102
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
  
0.947
LT85_1152
Sensory box histidine kinase/response regulator.
 
 
 0.788
LT85_3100
Sensory box histidine kinase/response regulator.
  
 0.648
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.641
LT85_2680
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
0.622
LT85_3631
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
0.598
LT85_2362
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
0.554
LT85_2843
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
  
0.495
LT85_3101
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor.
 
 
0.493
fliP
Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
    0.473
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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