STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_1516Surface antigen. (336 aa)    
Predicted Functional Partners:
LT85_1518
Sterol desaturase.
 
     0.935
LT85_1517
Putative polysaccharide deacetylase.
 
     0.934
LT85_1806
Isochorismatase of siderophore biosynthesis.
  
    0.874
LT85_1519
Putative transmembrane protein.
 
     0.828
LT85_0343
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.744
LT85_4992
Putative diheme cytochrome c-553.
 
 
 0.650
LT85_2857
Putative exported protein.
   
   0.649
LT85_1520
Molybdopterin-binding protein.
  
    0.639
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.586
LT85_1829
Putative diheme cytochrome c-553.
 
 
 0.586
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.