STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
hmuVABC-type hemin transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system. (271 aa)    
Predicted Functional Partners:
LT85_1671
Hemin ABC transporter; Permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.987
LT85_1672
Periplasmic hemin-binding protein.
 
 
 0.974
btuC
Vitamin B12 ABC transporter; Permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.965
hmuS
Hemin transport protein HmuS.
   
 0.964
LT85_1810
ABC-type Fe3+-siderophore transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.950
btuF
Vitamin B12 ABC transporter; B12-binding component BtuF.
 
 
 0.923
LT85_1811
ABC-type Fe3+-siderophore transport system; Permease 2 component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.860
LT85_1809
ABC-type Fe3+-siderophore transport system; Periplasmic iron-binding component.
 
 
 0.826
LT85_1674
TonB-dependent hemin; Ferrichrome receptor.
 
  
 0.789
LT85_1806
Isochorismatase of siderophore biosynthesis.
  
  
 0.695
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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