STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_1671Hemin ABC transporter; Permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (369 aa)    
Predicted Functional Partners:
LT85_1672
Periplasmic hemin-binding protein.
 
 
 0.989
hmuV
ABC-type hemin transport system; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.987
btuF
Vitamin B12 ABC transporter; B12-binding component BtuF.
 
 
 0.959
LT85_1812
ABC-type Fe3+-siderophore transport system; ATPase component.
 
 
 0.949
hmuS
Hemin transport protein HmuS.
 
  
 0.941
LT85_4004
ABC transporter related.
 
 
 0.940
LT85_1809
ABC-type Fe3+-siderophore transport system; Periplasmic iron-binding component.
 
 
 0.890
LT85_1674
TonB-dependent hemin; Ferrichrome receptor.
 
  
 0.784
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.566
LT85_0343
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.540
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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