Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LT85_0342 | LT85_1879 | LT85_0342 | LT85_1879 | Malonyl CoA-acyl carrier protein transacylase. | Chaperone protein DnaJ. | 0.970 |
LT85_0342 | LT85_2123 | LT85_0342 | LT85_2123 | Malonyl CoA-acyl carrier protein transacylase. | TPR domain protein. | 0.732 |
LT85_0342 | LT85_3591 | LT85_0342 | LT85_3591 | Malonyl CoA-acyl carrier protein transacylase. | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.828 |
LT85_0342 | cbpA | LT85_0342 | LT85_2286 | Malonyl CoA-acyl carrier protein transacylase. | DnaJ-class molecular chaperone CbpA. | 0.970 |
LT85_0342 | dnaJ | LT85_0342 | LT85_4393 | Malonyl CoA-acyl carrier protein transacylase. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.970 |
LT85_0342 | htpG | LT85_0342 | LT85_2049 | Malonyl CoA-acyl carrier protein transacylase. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.533 |
LT85_0342 | ndk | LT85_0342 | LT85_2709 | Malonyl CoA-acyl carrier protein transacylase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.547 |
LT85_0342 | ppiB-2 | LT85_0342 | LT85_2303 | Malonyl CoA-acyl carrier protein transacylase. | Peptidyl-prolyl cis-trans isomerase PpiB; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.947 |
LT85_0342 | rplM | LT85_0342 | LT85_4518 | Malonyl CoA-acyl carrier protein transacylase. | LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.980 |
LT85_1879 | LT85_0342 | LT85_1879 | LT85_0342 | Chaperone protein DnaJ. | Malonyl CoA-acyl carrier protein transacylase. | 0.970 |
LT85_1879 | LT85_2123 | LT85_1879 | LT85_2123 | Chaperone protein DnaJ. | TPR domain protein. | 0.596 |
LT85_1879 | LT85_3591 | LT85_1879 | LT85_3591 | Chaperone protein DnaJ. | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.734 |
LT85_1879 | htpG | LT85_1879 | LT85_2049 | Chaperone protein DnaJ. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.944 |
LT85_1879 | ndk | LT85_1879 | LT85_2709 | Chaperone protein DnaJ. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.692 |
LT85_1879 | ppiB-2 | LT85_1879 | LT85_2303 | Chaperone protein DnaJ. | Peptidyl-prolyl cis-trans isomerase PpiB; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.738 |
LT85_1879 | rplM | LT85_1879 | LT85_4518 | Chaperone protein DnaJ. | LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.715 |
LT85_2123 | LT85_0342 | LT85_2123 | LT85_0342 | TPR domain protein. | Malonyl CoA-acyl carrier protein transacylase. | 0.732 |
LT85_2123 | LT85_1879 | LT85_2123 | LT85_1879 | TPR domain protein. | Chaperone protein DnaJ. | 0.596 |
LT85_2123 | LT85_3591 | LT85_2123 | LT85_3591 | TPR domain protein. | Superoxide dismutase [Fe]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.501 |
LT85_2123 | cbpA | LT85_2123 | LT85_2286 | TPR domain protein. | DnaJ-class molecular chaperone CbpA. | 0.596 |
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