STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_2346Putative serine protease-like protein. (882 aa)    
Predicted Functional Partners:
LT85_4268
Type IV fimbrial biogenesis protein PilY1.
 
  
 0.691
LT85_4273
Type IV fimbrial biogenesis protein PilY1.
 
  
 0.691
LT85_3039
Phospholipase/lecithinase/hemolysin.
  
   
 0.640
LT85_0342
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.560
LT85_1987
Mg(2+) transport ATPase; P-type.
   
 0.545
LT85_4244
Mg(2+) transport ATPase; P-type.
   
 0.545
LT85_4869
Hypothetical protein; NMA0228-like.
   
    0.544
LT85_0972
Channel-forming transporter/cytolysins activator of TpsB family.
  
  
 0.519
LT85_2912
Channel-forming transporter/cytolysins activator of TpsB family.
  
  
 0.519
LT85_2204
Sigma-fimbriae usher protein.
  
    0.513
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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