Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LT85_0342 | LT85_1987 | Malonyl CoA-acyl carrier protein transacylase. | Mg(2+) transport ATPase; P-type. | 0.599 |
LT85_0342 | LT85_2346 | Malonyl CoA-acyl carrier protein transacylase. | Putative serine protease-like protein. | 0.560 |
LT85_0342 | LT85_4244 | Malonyl CoA-acyl carrier protein transacylase. | Mg(2+) transport ATPase; P-type. | 0.599 |
LT85_0342 | LT85_4268 | Malonyl CoA-acyl carrier protein transacylase. | Type IV fimbrial biogenesis protein PilY1. | 0.506 |
LT85_0342 | LT85_4273 | Malonyl CoA-acyl carrier protein transacylase. | Type IV fimbrial biogenesis protein PilY1. | 0.506 |
LT85_0972 | LT85_2346 | Channel-forming transporter/cytolysins activator of TpsB family. | Putative serine protease-like protein. | 0.519 |
LT85_0972 | LT85_4268 | Channel-forming transporter/cytolysins activator of TpsB family. | Type IV fimbrial biogenesis protein PilY1. | 0.438 |
LT85_0972 | LT85_4273 | Channel-forming transporter/cytolysins activator of TpsB family. | Type IV fimbrial biogenesis protein PilY1. | 0.433 |
LT85_1987 | LT85_0342 | Mg(2+) transport ATPase; P-type. | Malonyl CoA-acyl carrier protein transacylase. | 0.599 |
LT85_1987 | LT85_2346 | Mg(2+) transport ATPase; P-type. | Putative serine protease-like protein. | 0.545 |
LT85_1987 | LT85_4869 | Mg(2+) transport ATPase; P-type. | Hypothetical protein; NMA0228-like. | 0.447 |
LT85_2204 | LT85_2346 | Sigma-fimbriae usher protein. | Putative serine protease-like protein. | 0.513 |
LT85_2346 | LT85_0342 | Putative serine protease-like protein. | Malonyl CoA-acyl carrier protein transacylase. | 0.560 |
LT85_2346 | LT85_0972 | Putative serine protease-like protein. | Channel-forming transporter/cytolysins activator of TpsB family. | 0.519 |
LT85_2346 | LT85_1987 | Putative serine protease-like protein. | Mg(2+) transport ATPase; P-type. | 0.545 |
LT85_2346 | LT85_2204 | Putative serine protease-like protein. | Sigma-fimbriae usher protein. | 0.513 |
LT85_2346 | LT85_2912 | Putative serine protease-like protein. | Channel-forming transporter/cytolysins activator of TpsB family. | 0.519 |
LT85_2346 | LT85_3039 | Putative serine protease-like protein. | Phospholipase/lecithinase/hemolysin. | 0.640 |
LT85_2346 | LT85_4244 | Putative serine protease-like protein. | Mg(2+) transport ATPase; P-type. | 0.545 |
LT85_2346 | LT85_4268 | Putative serine protease-like protein. | Type IV fimbrial biogenesis protein PilY1. | 0.691 |
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