STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_2364Isoquinoline 1-oxidoreductase beta subunit. (778 aa)    
Predicted Functional Partners:
LT85_2365
Isoquinoline 1-oxidoreductase alpha subunit.
 
 0.990
LT85_2601
Isoquinoline 1-oxidoreductase alpha subunit.
 
 0.959
LT85_1828
Aerobic-type carbon monoxide dehydrogenase; Small subunit CoxS/CutS homologs.
 
 
 0.923
LT85_1830
Carbon monoxide dehydrogenase F protein.
 
  
 0.793
LT85_4453
CTP:molybdopterin cytidylyltransferase.
 
   
 0.718
LT85_2366
Oligopeptide transporter.
       0.482
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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