STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LT85_2482Xanthomonapepsin precursor. (621 aa)    
Predicted Functional Partners:
LT85_3707
Family S53 non-peptidase homologue.
  
     0.772
LT85_2603
Acid phosphatase.
  
     0.650
LT85_1360
Acid phosphatase.
  
     0.646
LT85_2211
Hypothetical protein.
  
     0.518
LT85_2382
Acid phosphatase.
  
     0.513
LT85_2404
Hypothetical protein; Belongs to the UPF0145 family.
  
     0.491
LT85_1394
Sel1-like repeat.
  
     0.463
LT85_0126
Acid phosphatase.
  
     0.460
LT85_2107
Hypothetical protein.
  
     0.445
LT85_3875
Accessory protein.
  
     0.427
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.